PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001258-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 466aa    MW: 48994.1 Da    PI: 6.2588
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001258-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1764.8e-24322384163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++kv++L+ eN+aL++el+++ +e++kl++e+
  PSME_00001258-RA 322 ERELKRQRRKQSNRESARRSRLRKQAECEELATKVDTLTVENMALRSELNRMAEECKKLTAEN 384
                       89**********************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.4E-33198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.2E-29137279No hitNo description
Gene3DG3DSA:1.20.5.1709.6E-20315381No hitNo description
PfamPF001704.4E-21322384IPR004827Basic-leucine zipper domain
SMARTSM003387.6E-23322386IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587324387IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-11325381No hitNo description
CDDcd147026.70E-25327377No hitNo description
PROSITE patternPS000360329344IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGTGEEGTPT KPPAKPSSSS QETPTTPVYP DWAAAFQAYY GPGATPPPPA FFASTVGSAP  60
TPHPYMWGGQ PLMPPYGTPL PYPAMYPHGG IYAHPSMPPG ALPYGHYGMP SPGNAEVTTT  120
LALPNAEAEG KSSEGKERNT MKRSKGSLGS LGMITGKGGE GGKATSGSAN EAMSQSGDSG  180
SDGSSEGSEE DNAQNDSQVA RKRSFDQMIV DGANAQSTNI SAYNTQAGEP YVTSSGHAMG  240
NPIGQAVAVP LGSVTGKPAA SGPITNLNIG MDYWNASAPG AITTVKGRGS AAGIPTAIVP  300
TTAQLMPPGR DGVPPELWIQ DERELKRQRR KQSNRESARR SRLRKQAECE ELATKVDTLT  360
VENMALRSEL NRMAEECKKL TAENTSIMER LKKSHGEDMT TTAEENGSTK ISLQSVKPEG  420
NGHFHDISRG INSSSTERSE QRQSEVCDSN GKVHTLLDAN ARSDTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338344RRSRLRK
2338345RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1152060.0BT115206.1 Picea glauca clone GQ03611_H02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244323.11e-129PREDICTED: G-box-binding factor 1-like isoform X2
TrEMBLA0A0C9QT240.0A0A0C9QT24_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10978_2763 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-77basic region/leucine zipper transcription factor 16